I don't necessarily have anything to add except to echo JAE's recommendations. The Fractal Focus G Mini and the Corsair 88R cases would be my top picks. All three cases use basically the same internal layout, but the Fractal and Corsair have fan filters.
Main: i5-3570K, ASRock Z77 Pro4-M, MSI RX480 8G, 500GB Crucial BX100, 2 TB Samsung EcoGreen F4, 16GB 1600MHz G.Skill @1.25V, EVGA 550-G2, Silverstone PS07B
HTPC: A8-5600K, MSI FM2-A75IA-E53, 4TB Seagate SSHD, 8GB 1866MHz G.Skill, Crosley D-25 Case Mod