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blastdoor · Mon Apr 13, 2020 7:22 am

I've been trying to install FAH on my Ubuntu 2990wx system but can't seem to get it working.

I'm running 18.04.4 LTS (GNU/Linux 5.0.6-050006-generic x86_64).

FAH Control appears to be installed, but I don't think FAH Client is installed. I've attempted to install it several times, and it appears to make progress, but doesn't seem to quite make it.

When I go into the Ubuntu Software app and look under "Installed" I see two entries for fahclient and both have an "install" button next to them, rather than a "remove". Clicking "install" just repeated the process of seeming to make progress but never fully installing.

When I launch FAH Control, it just sits there saying "connecting."

Might anybody have an idea of how to get this installed?

Topinio · Mon Apr 13, 2020 7:47 am

What does:

dpkg-query -l fah*

report?

What about:

for p in `dpkg-query -l bas* | grep "^ii" | awk '{print $2}'` ; do dpkg-query -s ${p} ; done

(Disclaimer: I am not an Ubuntu / Debian user, but have many Red Hat EL6 / EL7 / Fedora systems, and run FAH on them.)

blastdoor · Mon Apr 13, 2020 8:28 am

Topinio wrote:
What does:
Code: Select all
dpkg-query -l fah*
report?

What about:
Code: Select all
for p in `dpkg-query -l bas* | grep "^ii" | awk '{print $2}'` ; do dpkg-query -s ${p} ; done
(Disclaimer: I am not an Ubuntu / Debian user, but have many Red Hat EL6 / EL7 / Fedora systems, and run FAH on them.)

Thanks for your reply. I tried both lines you suggest, but I don't understand the output. Pasted below...

Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name Version Architecture Description
+++-========================-=================-=================-=====================================================
iF fahclient 7.5.1 amd64 Folding@home Console Client
ii fahcontrol 7.5.1-1 all Folding@home Client Control
ii fahviewer 7.5.1 amd64 Folding@home 3D Simulation Viewer

and

Package: base-files
Essential: yes
Status: install ok installed
Priority: required
Section: admin
Installed-Size: 387
Maintainer: Ubuntu Developers <[email protected]>
Architecture: amd64
Multi-Arch: foreign
Version: 10.1ubuntu2.8
Replaces: base, dpkg (<= 1.15.0), miscutils
Provides: base
Depends: libc6 (>= 2.3.4)
Pre-Depends: awk
Breaks: initscripts (<< 2.88dsf-13.3), sendfile (<< 2.1b.20080616-5.2~)
Conffiles:
/etc/debian_version 71f3b31c52b52a91784e496ddf94b019
/etc/default/motd-news c08a329a603b640095da5ffe4e73491c
/etc/dpkg/origins/debian 731423fa8ba067262f8ef37882d1e742
/etc/dpkg/origins/ubuntu ea35901c45553c3451f60476be94d2d8
/etc/host.conf 89408008f2585c957c031716600d5a80
/etc/issue 9c771e1fa41a5a833f5824b41bd3eb1f
/etc/issue.net 39eb618332de8dab671b125032ddb788
/etc/legal 0110925f6e068836ef2e09356e3651d9
/etc/lsb-release 741234b05e5349212282f0b1477be224
/etc/profile.d/01-locale-fix.sh 870346d97b16faac4a371b04ffe4cc2f
/etc/update-motd.d/00-header 4a1e6eed7a59f200b4267085721750a3
/etc/update-motd.d/10-help-text d95d18b11ac12cf6582d08a1643034f3
/etc/update-motd.d/50-motd-news 0031f05946932b1e0a4f4ec86dda97e0
Description: Debian base system miscellaneous files
This package contains the basic filesystem hierarchy of a Debian system, and
several important miscellaneous files, such as /etc/debian_version,
/etc/host.conf, /etc/issue, /etc/motd, /etc/profile, and others,
and the text of several common licenses in use on Debian systems.
Original-Maintainer: Santiago Vila <[email protected]>
Package: base-passwd
Essential: yes
Status: install ok installed
Priority: required
Section: admin
Installed-Size: 228
Maintainer: Colin Watson <[email protected]>
Architecture: amd64
Multi-Arch: foreign
Version: 3.5.44
Replaces: base
Depends: libc6 (>= 2., libdebconfclient0 (>= 0.145)
Recommends: debconf (>= 0.5) | debconf-2.0
Description: Debian base system master password and group files
These are the canonical master copies of the user database files
(/etc/passwd and /etc/group), containing the Debian-allocated user and
group IDs. The update-passwd tool is provided to keep the system databases
synchronized with these master files.
Package: bash
Essential: yes
Status: install ok installed
Priority: required
Section: shells
Installed-Size: 1588
Maintainer: Ubuntu Developers <[email protected]>
Architecture: amd64
Multi-Arch: foreign
Version: 4.4.18-2ubuntu1.2
Replaces: bash-completion (<< 20060301-0), bash-doc (<= 2.05-1)
Depends: base-files (>= 2.1.12), debianutils (>= 2.15)
Pre-Depends: libc6 (>= 2.15), libtinfo5 (>= 6)
Recommends: bash-completion (>= 20060301-0)
Suggests: bash-doc
Conflicts: bash-completion (<< 20060301-0)
Conffiles:
/etc/bash.bashrc 3aa8b92d1dd6ddf4daaedc019662f1dc
/etc/skel/.bash_logout 22bfb8c1dd94b5f3813a2b25da67463f
/etc/skel/.bashrc 1f98b8f3f3c8f8927eca945d59dcc1c6
/etc/skel/.profile f4e81ade7d6f9fb342541152d08e7a97
Description: GNU Bourne Again SHell
Bash is an sh-compatible command language interpreter that executes
commands read from the standard input or from a file. Bash also
incorporates useful features from the Korn and C shells (ksh and csh).
.
Bash is ultimately intended to be a conformant implementation of the
IEEE POSIX Shell and Tools specification (IEEE Working Group 1003.2).
.
The Programmable Completion Code, by Ian Macdonald, is now found in
the bash-completion package.
Homepage: http://tiswww.case.edu/php/chet/bash/bashtop.html
Original-Maintainer: Matthias Klose <[email protected]>
Package: bash-completion
Status: install ok installed
Priority: standard
Section: shells
Installed-Size: 1361
Maintainer: Ubuntu Developers <[email protected]>
Architecture: all
Multi-Arch: foreign
Version: 1:2.8-1ubuntu1
Conffiles:
/etc/bash_completion a81b3f1cb197219b815942f4fc7fa94e
/etc/profile.d/bash_completion.sh 6caf94804f6065c3bb5099a70229efbd
Description: programmable completion for the bash shell
bash completion extends bash's standard completion behavior to achieve
complex command lines with just a few keystrokes. This project was
conceived to produce programmable completion routines for the most
common Linux/UNIX commands, reducing the amount of typing sysadmins
and programmers need to do on a daily basis.
Homepage: https://github.com/scop/bash-completion
Original-Maintainer: Gabriel F. T. Gomes <[email protected]>

Glorious · Mon Apr 13, 2020 8:35 am

This is all one computer, right? So FAHcontrol is connecting via localhost?

If you are controlling a different host, there is some configuration work.

If this is a single host, what does `ps -aef | grep FAH` say?

EDIT: I think I had to do something when I did this last week, but I already forgot what I might have done. I'm just wondering if it is even trying to run at all, since you've got "iF" in the dpkg output, which mean it's installed but not fully configured.

I got the deb or whatever from the Folding guys directly, and did `dpkg -i`. Fairly sure there was a ncurses installer option thing, like where you put in team name etc...

I'll tell you what: THEY NEED A BETTER GUIDE.

Anyway, I got this working so I might be able to get you through it too.

Mon Apr 13, 2020 9:05 am

Sounds like possibly a missing library dependency...

blastdoor · Mon Apr 13, 2020 9:30 am

Yeah, it's just a single computer.

Here's the output from the ps -aef command:

6098 4000 0 08:18 tty2 00:00:29 /usr/bin/python /usr/bin/FAHControl
7240 6302 0 09:45 pts/1 00:00:00 grep --color=auto FAH

Glorious wrote:
This is all one computer, right? So FAHcontrol is connecting via localhost?

If you are controlling a different host, there is some configuration work.

If this is a single host, what does `ps -aef | grep FAH` say?

EDIT: I think I had to do something when I did this last week, but I already forgot what I might have done. I'm just wondering if it is even trying to run at all, since you've got "iF" in the dpkg output, which mean it's installed but not fully configured.

I got the deb or whatever from the Folding guys directly, and did `dpkg -i`. Fairly sure there was a ncurses installer option thing, like where you put in team name etc...

I'll tell you what: THEY NEED A BETTER GUIDE.

Anyway, I got this working so I might be able to get you through it too.

blastdoor · Mon Apr 13, 2020 9:57 am

just brew it! wrote:
Sounds like possibly a missing library dependency...

It seems like Linux is always reminding me that I'm actually a Mac person, not a Linux person.

But then Apple is always reminding me that the only "pro" users they care to sell to are those who use Final Cut Pro.

Sigh.

Mon Apr 13, 2020 10:06 am

blastdoor wrote:
just brew it! wrote:
Sounds like possibly a missing library dependency...

It seems like Linux is always reminding me that I'm actually a Mac person, not a Linux person.

But then Apple is always reminding me that the only "pro" users they care to sell to are those who use Final Cut Pro.

Sigh.

The issue is that once you step outside the curated garden of your Linux distro's official repository, software installation frequently becomes a dicey proposition. Stay within the repos, and it is (almost always) friction-free. Step outside, and you may get lucky... or you may go down a rabbit hole.

Aside from the standard C runtime, many of the support libraries are moving targets; and the proliferation of different distros doesn't help. Unless the application was built against the specific versions of the libraries included with your distro, things can go off the rails.

TBH would've thought you'd be OK with Ubuntu, since it is so popular.

blastdoor · Mon Apr 13, 2020 10:13 am

just brew it! wrote:
blastdoor wrote:
just brew it! wrote:
Sounds like possibly a missing library dependency...

It seems like Linux is always reminding me that I'm actually a Mac person, not a Linux person.

But then Apple is always reminding me that the only "pro" users they care to sell to are those who use Final Cut Pro.

Sigh.

The issue is that once you step outside the curated garden of your Linux distro's official repository, software installation frequently becomes a dicey proposition. Stay within the repos, and it is (almost always) friction-free. Step outside, and you may get lucky... or you may go down a rabbit hole.

Aside from the standard C runtime, many of the support libraries are moving targets; and the proliferation of different distros doesn't help. Unless the application was built against the specific versions of the libraries included with your distro, things can go off the rails.

TBH would've thought you'd be OK with Ubuntu, since it is so popular.

Yeah... and I wonder if I've inadvertently done something that forked my installation. I mostly just run R and Stan on this machine.

Mon Apr 13, 2020 10:41 am

If I have some time later I'll poke at it and see if I can get it to install on my 18.04 LTS system.

Glorious · Mon Apr 13, 2020 10:51 am

What I'd do is remove it from the software center GUI thingy you did it with originally, and then get the package for the client directly from the FAH guys:

https://download.foldingathome.org/rele ... _amd64.deb

in a terminal, do `dpkg -i fahclient_7.5.1_amd64.deb`

I don't recall any dependency issues for the client (the viewer and the controller did though , IIRC), but it should prompt you for some basic configuration information. If that isn't being passed up to you, that might be the problem right there.

EDIT: nevermind, /var/log/dpkg.log has a bunch of complaining about half-configured/half-installed for the client. I just did this 2 weeks ago, but the bigger challenge was figuring out how to get FAHcontrol to actually control several other clients, because the logging is useless and counter-intuitive, the documentation doesn't seem discuss it, so that whole thing pushed out whatever I may have done on the initial single machine (which keeps intermittently 3 second graphics hanging because of the #*@*&@^&@ i915 regression between 18.04.4 HWE and the 18.04.3 HWE, since 20.04 is out next week I can't be bothered to install whatever 5.4 kernel has the fix)

VIDEO DRIVERS. LINUX. ARGHHHHHHHHHHHH

Topinio · Mon Apr 13, 2020 12:42 pm

Sorry! I typo'd it.

for p in `dpkg-query -l fah* | grep "^ii" | awk '{print $2}'` ; do dpkg-query -s ${p} ; done

This:

blastdoor wrote:
iF fahclient 7.5.1

output from the earlier command shows that fahclient (the most important package) is installed but "half-configured". If you can do a

dpkg-query -s fahclient

that will maybe tell you more.

Can you put the below into a file called config.xml in a directory all on its own, cd to is, then run FAHClient on the command line?

You'll need to replace the path in the variable "data-directory" with the real path to the directory you are in, the "passkey" variable with your own one, and the same for the "user" and maybe "team" variables. The "cpus" variable for the CPU slot can be changed once you're up and running.

If it doesn't work, post your log.txt

<config>
  <!-- Client Control -->
  <data-directory v='/scratch/atg/FAH'/>

  <!-- Slot Control -->
  <power v='FULL'/>

  <!-- User Information -->
  <passkey v='c0ffeec0ffeec0ffeec0ffeec0ffeeee'/>
  <team v='2630'/>
  <user v='Topinio'/>

  <!-- Folding Slots -->
  <slot id='0' type='CPU'>
    <!-- Folding Slot Configuration -->
    <cpus v='2'/>
    <next-unit-percentage v='100'/>
  </slot>
  <slot id='1' type='GPU'>
    <paused v='true'/>
    <!-- Work Unit Control -->
    <next-unit-percentage v='100'/>
  </slot>

</config>

blastdoor · Tue Apr 14, 2020 10:16 am

It seems to be working... I changed the user name to my name and it looks like it's running.

The log file shows progress but also the occasional error, for example:

15:10:09:WU00:FS00:0xa7:Completed 330000 out of 500000 steps (66%)
15:10:22:WU00:FS00:0xa7:Completed 335000 out of 500000 steps (67%)
15:10:36:WU00:FS00:0xa7:Completed 340000 out of 500000 steps (68%)
15:10:44:WU01:FS01:Connecting to 65.254.110.245:8080
[93m15:10:44:WARNING:WU01:FS01:Failed to get assignment from '65.254.110.245:8080': No WUs available for this configuration[0m
15:10:44:WU01:FS01:Connecting to 18.218.241.186:80
[93m15:10:44:WARNING:WU01:FS01:Failed to get assignment from '18.218.241.186:80': No WUs available for this configuration[0m
[91m15:10:44:ERROR:WU01:FS01:Exception: Could not get an assignment[0m
15:10:49:WU00:FS00:0xa7:Completed 345000 out of 500000 steps (69%)
15:11:03:WU00:FS00:0xa7:Completed 350000 out of 500000 steps (70%)

Wondering -- might the errors associated with trying to get a GPU work unit?

blastdoor · Tue Apr 14, 2020 10:31 am

I've completed a work unit, but so far I'm not seeing credit for it showing up under my username...

edit: and now it seems like maybe I'm getting credit; the stats page is reporting two active clients for me.

So far the GPU still isn't working, but I have a wimpy GPU, so that probably doesn't matter.

blastdoor · Tue Apr 14, 2020 12:41 pm

I'm seeing GROMACS errors in the log file, for example:

16:26:52:WU02:FS00:0xa7:ERROR:
16:26:52:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
16:26:52:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
16:26:52:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
16:26:52:WU02:FS00:0xa7:ERROR:
16:26:52:WU02:FS00:0xa7:ERROR:Fatal error:
16:26:52:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
16:26:52:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
16:26:52:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
16:26:52:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
16:26:52:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
16:26:52:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
16:26:56:WU02:FS00:0xa7:WARNING:Unexpected exit() call
16:26:56:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
16:26:56:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
16:26:56:WU02:FS00:0xa7:Saving result file md.log
16:26:56:WU02:FS00:0xa7:Saving result file science.log
16:26:57:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)

Topinio · Tue Apr 14, 2020 1:32 pm

Did you use your own passkey?

Can you post your full config.xml using the Code tags? And the full log.txt?

That GROMACS error is basically trying to run a too small job on a big system.

blastdoor · Tue Apr 14, 2020 2:35 pm

I think maybe I am getting credit for WUs now, but here's my config.xml file (note I don't use a passkey):

<config>
  <!-- Network -->
  <proxy v=':8080'/>

  <!-- Slot Control -->
  <power v='full'/>

  <!-- User Information -->
  <team v='2630'/>
  <user v='Blastdoor'/>

  <!-- Folding Slots -->
  <slot id='1' type='GPU'/>
  <slot id='0' type='CPU'/>
</config>

blastdoor · Tue Apr 14, 2020 2:44 pm

Most recent full log file is too big to post in a message, but I'm cutting down to what's hopefully sufficient:

*********************** Log Started 2020-04-14T19:16:30Z ***********************
19:16:30:************************* Folding@home Client *************************
19:16:30:    Website: https://foldingathome.org/
19:16:30:  Copyright: (c) 2009-2018 foldingathome.org
19:16:30:     Author: Joseph Coffland <[email protected]>
19:16:30:       Args: 
19:16:30:     Config: /home/FAH/config.xml
19:16:30:******************************** Build ********************************
19:16:30:    Version: 7.5.1
19:16:30:       Date: May 11 2018
19:16:30:       Time: 19:59:04
19:16:30: Repository: Git
19:16:30:   Revision: 4705bf53c635f88b8fe85af7675557e15d491ff0
19:16:30:     Branch: master
19:16:30:   Compiler: GNU 6.3.0 20170516
19:16:30:    Options: -std=gnu++98 -O3 -funroll-loops
19:16:30:   Platform: linux2 4.14.0-3-amd64
19:16:30:       Bits: 64
19:16:30:       Mode: Release
19:16:30:******************************* System ********************************
19:16:30:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:16:30:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:16:30:       CPUs: 64
19:16:30:     Memory: 62.84GiB
19:16:30:Free Memory: 57.73GiB
19:16:30:    Threads: POSIX_THREADS
19:16:30: OS Version: 5.0
19:16:30:Has Battery: false
19:16:30: On Battery: false
19:16:30: UTC Offset: -4
19:16:30:        PID: 129994
19:16:30:        CWD: /home/FAH
19:16:30:         OS: Linux 5.0.6-050006-generic x86_64
19:16:30:    OS Arch: AMD64
19:16:30:       GPUs: 1
19:16:30:      GPU 0: Bus:66 Slot:0 Func:0 NVIDIA:5 GP108 [GeForce GT 1030]
19:16:30:       CUDA: Not detected: Failed to open dynamic library 'libcuda.so':
19:16:30:             libcuda.so: cannot open shared object file: No such file or
19:16:30:             directory
19:16:30:     OpenCL: Not detected: Failed to open dynamic library 'libOpenCL.so':
19:16:30:             libOpenCL.so: cannot open shared object file: No such file or
19:16:30:             directory
19:16:30:***********************************************************************
19:16:30:<config>
19:16:30:  <!-- Network -->
19:16:30:  <proxy v=':8080'/>
19:16:30:
19:16:30:  <!-- Slot Control -->
19:16:30:  <power v='full'/>
19:16:30:
19:16:30:  <!-- User Information -->
19:16:30:  <team v='2630'/>
19:16:30:  <user v='Blastdoor'/>
19:16:30:
19:16:30:  <!-- Folding Slots -->
19:16:30:  <slot id='1' type='GPU'/>
19:16:30:  <slot id='0' type='CPU'/>
19:16:30:</config>
19:16:30:Trying to access database...
19:16:30:Successfully acquired database lock
19:16:30:Enabled folding slot 01: READY gpu:0:GP108 [GeForce GT 1030]
19:16:30:Enabled folding slot 00: READY cpu:63
[91m19:16:30:ERROR:No compute devices matched GPU #0 NVIDIA:5 GP108 [GeForce GT 1030].  You may need to update your graphics drivers.[0m
19:16:30:WU01:FS00:Starting
19:16:30:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:16:30:WU01:FS00:Started FahCore on PID 130003
19:16:30:WU01:FS00:Core PID:130007
19:16:30:WU01:FS00:FahCore 0xa7 started
19:16:30:WU00:FS01:Connecting to 65.254.110.245:8080
19:16:31:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:16:30Z ***********************
19:16:31:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:16:31:WU01:FS00:0xa7:       Type: 0xa7
19:16:31:WU01:FS00:0xa7:       Core: Gromacs
19:16:31:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130003 -checkpoint 15 -np
19:16:31:WU01:FS00:0xa7:             63
19:16:31:WU01:FS00:0xa7:************************************ CBang *************************************
19:16:31:WU01:FS00:0xa7:       Date: Nov 5 2019
19:16:31:WU01:FS00:0xa7:       Time: 06:06:57
19:16:31:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:16:31:WU01:FS00:0xa7:     Branch: master
19:16:31:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:16:31:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:16:31:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:16:31:WU01:FS00:0xa7:       Bits: 64
19:16:31:WU01:FS00:0xa7:       Mode: Release
19:16:31:WU01:FS00:0xa7:************************************ System ************************************
19:16:31:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:16:31:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:16:31:WU01:FS00:0xa7:       CPUs: 64
19:16:31:WU01:FS00:0xa7:     Memory: 62.84GiB
19:16:31:WU01:FS00:0xa7:Free Memory: 57.73GiB
19:16:31:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:16:31:WU01:FS00:0xa7: OS Version: 5.0
19:16:31:WU01:FS00:0xa7:Has Battery: false
19:16:31:WU01:FS00:0xa7: On Battery: false
19:16:31:WU01:FS00:0xa7: UTC Offset: -4
19:16:31:WU01:FS00:0xa7:        PID: 130007
19:16:31:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:16:31:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:16:31:WU01:FS00:0xa7:    Version: 0.0.18
19:16:31:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:16:31:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:16:31:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:16:31:WU01:FS00:0xa7:       Date: Nov 5 2019
19:16:31:WU01:FS00:0xa7:       Time: 06:13:26
19:16:31:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:16:31:WU01:FS00:0xa7:     Branch: master
19:16:31:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:16:31:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:16:31:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:16:31:WU01:FS00:0xa7:       Bits: 64
19:16:31:WU01:FS00:0xa7:       Mode: Release
19:16:31:WU01:FS00:0xa7:************************************ Build *************************************
19:16:31:WU01:FS00:0xa7:       SIMD: avx_256
19:16:31:WU01:FS00:0xa7:********************************************************************************
19:16:31:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:16:31:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:16:31:WU01:FS00:0xa7:Reading tar file core.xml
19:16:31:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:16:31:WU01:FS00:0xa7:Digital signatures verified
19:16:31:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:16:31:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:16:31:WU01:FS00:0xa7:ERROR:
19:16:31:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:16:31:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:16:31:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:16:31:WU01:FS00:0xa7:ERROR:
19:16:31:WU01:FS00:0xa7:ERROR:Fatal error:
19:16:31:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:16:31:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:16:31:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:16:31:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:16:31:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:16:31:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
[93m19:16:31:WARNING:WU00:FS01:Failed to get assignment from '65.254.110.245:8080': No WUs available for this configuration[0m
19:16:31:WU00:FS01:Connecting to 18.218.241.186:80
[93m19:16:32:WARNING:WU00:FS01:Failed to get assignment from '18.218.241.186:80': No WUs available for this configuration[0m
[91m19:16:32:ERROR:WU00:FS01:Exception: Could not get an assignment[0m
19:16:32:WU00:FS01:Connecting to 65.254.110.245:8080
[93m19:16:32:WARNING:WU00:FS01:Failed to get assignment from '65.254.110.245:8080': No WUs available for this configuration[0m
19:16:32:WU00:FS01:Connecting to 18.218.241.186:80
[93m19:16:33:WARNING:WU00:FS01:Failed to get assignment from '18.218.241.186:80': No WUs available for this configuration[0m
[91m19:16:33:ERROR:WU00:FS01:Exception: Could not get an assignment[0m
19:16:35:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:16:35:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:16:35:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:16:35:WU01:FS00:0xa7:Saving result file md.log
19:16:35:WU01:FS00:0xa7:Saving result file science.log
19:16:36:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:16:36:WU01:FS00:Starting
19:16:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:16:36:WU01:FS00:Started FahCore on PID 130082
19:16:36:WU01:FS00:Core PID:130086
19:16:36:WU01:FS00:FahCore 0xa7 started
19:16:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:16:36Z ***********************
19:16:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:16:37:WU01:FS00:0xa7:       Type: 0xa7
19:16:37:WU01:FS00:0xa7:       Core: Gromacs
19:16:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130082 -checkpoint 15 -np
19:16:37:WU01:FS00:0xa7:             63
19:16:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:16:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:16:37:WU01:FS00:0xa7:       Time: 06:06:57
19:16:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:16:37:WU01:FS00:0xa7:     Branch: master
19:16:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:16:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:16:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:16:37:WU01:FS00:0xa7:       Bits: 64
19:16:37:WU01:FS00:0xa7:       Mode: Release
19:16:37:WU01:FS00:0xa7:************************************ System ************************************
19:16:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:16:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:16:37:WU01:FS00:0xa7:       CPUs: 64
19:16:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:16:37:WU01:FS00:0xa7:Free Memory: 57.75GiB
19:16:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:16:37:WU01:FS00:0xa7: OS Version: 5.0
19:16:37:WU01:FS00:0xa7:Has Battery: false
19:16:37:WU01:FS00:0xa7: On Battery: false
19:16:37:WU01:FS00:0xa7: UTC Offset: -4
19:16:37:WU01:FS00:0xa7:        PID: 130086
19:16:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:16:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:16:37:WU01:FS00:0xa7:    Version: 0.0.18
19:16:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:16:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:16:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:16:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:16:37:WU01:FS00:0xa7:       Time: 06:13:26
19:16:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:16:37:WU01:FS00:0xa7:     Branch: master
19:16:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:16:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:16:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:16:37:WU01:FS00:0xa7:       Bits: 64
19:16:37:WU01:FS00:0xa7:       Mode: Release
19:16:37:WU01:FS00:0xa7:************************************ Build *************************************
19:16:37:WU01:FS00:0xa7:       SIMD: avx_256
19:16:37:WU01:FS00:0xa7:********************************************************************************
19:16:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:16:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:16:37:WU01:FS00:0xa7:Reading tar file core.xml
19:16:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:16:37:WU01:FS00:0xa7:Digital signatures verified
19:16:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:16:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:16:37:WU01:FS00:0xa7:ERROR:
19:16:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:16:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:16:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:16:37:WU01:FS00:0xa7:ERROR:
19:16:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:16:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:16:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:16:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:16:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:16:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:16:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:16:41:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:16:41:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:16:41:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:16:41:WU01:FS00:0xa7:Saving result file md.log
19:16:41:WU01:FS00:0xa7:Saving result file science.log
19:16:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:17:32:WU00:FS01:Connecting to 65.254.110.245:8080
[93m19:17:32:WARNING:WU00:FS01:Failed to get assignment from '65.254.110.245:8080': No WUs available for this configuration[0m
19:17:32:WU00:FS01:Connecting to 18.218.241.186:80
[93m19:17:32:WARNING:WU00:FS01:Failed to get assignment from '18.218.241.186:80': No WUs available for this configuration[0m
[91m19:17:32:ERROR:WU00:FS01:Exception: Could not get an assignment[0m
19:17:36:WU01:FS00:Starting
19:17:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:17:36:WU01:FS00:Started FahCore on PID 130233
19:17:36:WU01:FS00:Core PID:130237
19:17:36:WU01:FS00:FahCore 0xa7 started
19:17:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:17:36Z ***********************
19:17:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:17:37:WU01:FS00:0xa7:       Type: 0xa7
19:17:37:WU01:FS00:0xa7:       Core: Gromacs
19:17:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130233 -checkpoint 15 -np
19:17:37:WU01:FS00:0xa7:             63
19:17:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:17:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:17:37:WU01:FS00:0xa7:       Time: 06:06:57
19:17:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:17:37:WU01:FS00:0xa7:     Branch: master
19:17:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:17:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:17:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:17:37:WU01:FS00:0xa7:       Bits: 64
19:17:37:WU01:FS00:0xa7:       Mode: Release
19:17:37:WU01:FS00:0xa7:************************************ System ************************************
19:17:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:17:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:17:37:WU01:FS00:0xa7:       CPUs: 64
19:17:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:17:37:WU01:FS00:0xa7:Free Memory: 57.75GiB
19:17:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:17:37:WU01:FS00:0xa7: OS Version: 5.0
19:17:37:WU01:FS00:0xa7:Has Battery: false
19:17:37:WU01:FS00:0xa7: On Battery: false
19:17:37:WU01:FS00:0xa7: UTC Offset: -4
19:17:37:WU01:FS00:0xa7:        PID: 130237
19:17:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:17:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:17:37:WU01:FS00:0xa7:    Version: 0.0.18
19:17:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:17:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:17:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:17:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:17:37:WU01:FS00:0xa7:       Time: 06:13:26
19:17:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:17:37:WU01:FS00:0xa7:     Branch: master
19:17:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:17:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:17:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:17:37:WU01:FS00:0xa7:       Bits: 64
19:17:37:WU01:FS00:0xa7:       Mode: Release
19:17:37:WU01:FS00:0xa7:************************************ Build *************************************
19:17:37:WU01:FS00:0xa7:       SIMD: avx_256
19:17:37:WU01:FS00:0xa7:********************************************************************************
19:17:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:17:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:17:37:WU01:FS00:0xa7:Reading tar file core.xml
19:17:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:17:37:WU01:FS00:0xa7:Digital signatures verified
19:17:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:17:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:17:37:WU01:FS00:0xa7:ERROR:
19:17:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:17:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:17:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:17:37:WU01:FS00:0xa7:ERROR:
19:17:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:17:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:17:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:17:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:17:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:17:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:17:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:17:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:17:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:17:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:17:42:WU01:FS00:0xa7:Saving result file md.log
19:17:42:WU01:FS00:0xa7:Saving result file science.log
19:17:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:18:36:WU01:FS00:Starting
19:18:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:18:36:WU01:FS00:Started FahCore on PID 130378
19:18:36:WU01:FS00:Core PID:130382
19:18:36:WU01:FS00:FahCore 0xa7 started
19:18:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:18:36Z ***********************
19:18:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:18:37:WU01:FS00:0xa7:       Type: 0xa7
19:18:37:WU01:FS00:0xa7:       Core: Gromacs
19:18:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130378 -checkpoint 15 -np
19:18:37:WU01:FS00:0xa7:             63
19:18:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:18:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:18:37:WU01:FS00:0xa7:       Time: 06:06:57
19:18:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:18:37:WU01:FS00:0xa7:     Branch: master
19:18:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:18:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:18:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:18:37:WU01:FS00:0xa7:       Bits: 64
19:18:37:WU01:FS00:0xa7:       Mode: Release
19:18:37:WU01:FS00:0xa7:************************************ System ************************************
19:18:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:18:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:18:37:WU01:FS00:0xa7:       CPUs: 64
19:18:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:18:37:WU01:FS00:0xa7:Free Memory: 57.74GiB
19:18:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:18:37:WU01:FS00:0xa7: OS Version: 5.0
19:18:37:WU01:FS00:0xa7:Has Battery: false
19:18:37:WU01:FS00:0xa7: On Battery: false
19:18:37:WU01:FS00:0xa7: UTC Offset: -4
19:18:37:WU01:FS00:0xa7:        PID: 130382
19:18:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:18:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:18:37:WU01:FS00:0xa7:    Version: 0.0.18
19:18:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:18:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:18:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:18:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:18:37:WU01:FS00:0xa7:       Time: 06:13:26
19:18:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:18:37:WU01:FS00:0xa7:     Branch: master
19:18:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:18:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:18:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:18:37:WU01:FS00:0xa7:       Bits: 64
19:18:37:WU01:FS00:0xa7:       Mode: Release
19:18:37:WU01:FS00:0xa7:************************************ Build *************************************
19:18:37:WU01:FS00:0xa7:       SIMD: avx_256
19:18:37:WU01:FS00:0xa7:********************************************************************************
19:18:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:18:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:18:37:WU01:FS00:0xa7:Reading tar file core.xml
19:18:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:18:37:WU01:FS00:0xa7:Digital signatures verified
19:18:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:18:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:18:37:WU01:FS00:0xa7:ERROR:
19:18:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:18:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:18:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:18:37:WU01:FS00:0xa7:ERROR:
19:18:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:18:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:18:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:18:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:18:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:18:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:18:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:18:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:18:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:18:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:18:42:WU01:FS00:0xa7:Saving result file md.log
19:18:42:WU01:FS00:0xa7:Saving result file science.log
19:18:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:19:10:WU00:FS01:Connecting to 65.254.110.245:8080
[93m19:19:10:WARNING:WU00:FS01:Failed to get assignment from '65.254.110.245:8080': No WUs available for this configuration[0m
19:19:10:WU00:FS01:Connecting to 18.218.241.186:80
[93m19:19:10:WARNING:WU00:FS01:Failed to get assignment from '18.218.241.186:80': No WUs available for this configuration[0m
[91m19:19:10:ERROR:WU00:FS01:Exception: Could not get an assignment[0m
19:19:36:WU01:FS00:Starting
19:19:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:19:36:WU01:FS00:Started FahCore on PID 130527
19:19:36:WU01:FS00:Core PID:130531
19:19:36:WU01:FS00:FahCore 0xa7 started
19:19:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:19:36Z ***********************
19:19:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:19:37:WU01:FS00:0xa7:       Type: 0xa7
19:19:37:WU01:FS00:0xa7:       Core: Gromacs
19:19:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130527 -checkpoint 15 -np
19:19:37:WU01:FS00:0xa7:             63
19:19:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:19:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:19:37:WU01:FS00:0xa7:       Time: 06:06:57
19:19:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:19:37:WU01:FS00:0xa7:     Branch: master
19:19:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:19:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:19:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:19:37:WU01:FS00:0xa7:       Bits: 64
19:19:37:WU01:FS00:0xa7:       Mode: Release
19:19:37:WU01:FS00:0xa7:************************************ System ************************************
19:19:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:19:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:19:37:WU01:FS00:0xa7:       CPUs: 64
19:19:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:19:37:WU01:FS00:0xa7:Free Memory: 57.74GiB
19:19:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:19:37:WU01:FS00:0xa7: OS Version: 5.0
19:19:37:WU01:FS00:0xa7:Has Battery: false
19:19:37:WU01:FS00:0xa7: On Battery: false
19:19:37:WU01:FS00:0xa7: UTC Offset: -4
19:19:37:WU01:FS00:0xa7:        PID: 130531
19:19:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:19:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:19:37:WU01:FS00:0xa7:    Version: 0.0.18
19:19:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:19:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:19:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:19:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:19:37:WU01:FS00:0xa7:       Time: 06:13:26
19:19:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:19:37:WU01:FS00:0xa7:     Branch: master
19:19:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:19:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:19:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:19:37:WU01:FS00:0xa7:       Bits: 64
19:19:37:WU01:FS00:0xa7:       Mode: Release
19:19:37:WU01:FS00:0xa7:************************************ Build *************************************
19:19:37:WU01:FS00:0xa7:       SIMD: avx_256
19:19:37:WU01:FS00:0xa7:********************************************************************************
19:19:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:19:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:19:37:WU01:FS00:0xa7:Reading tar file core.xml
19:19:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:19:37:WU01:FS00:0xa7:Digital signatures verified
19:19:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:19:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:19:37:WU01:FS00:0xa7:ERROR:
19:19:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:19:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:19:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:19:37:WU01:FS00:0xa7:ERROR:
19:19:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:19:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:19:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:19:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:19:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:19:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:19:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:19:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:19:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:19:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:19:42:WU01:FS00:0xa7:Saving result file md.log
19:19:42:WU01:FS00:0xa7:Saving result file science.log
19:19:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:20:36:WU01:FS00:Starting
19:20:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:20:36:WU01:FS00:Started FahCore on PID 130669
19:20:36:WU01:FS00:Core PID:130673
19:20:36:WU01:FS00:FahCore 0xa7 started
19:20:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:20:36Z ***********************
19:20:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:20:37:WU01:FS00:0xa7:       Type: 0xa7
19:20:37:WU01:FS00:0xa7:       Core: Gromacs
19:20:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130669 -checkpoint 15 -np
19:20:37:WU01:FS00:0xa7:             63
19:20:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:20:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:20:37:WU01:FS00:0xa7:       Time: 06:06:57
19:20:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:20:37:WU01:FS00:0xa7:     Branch: master
19:20:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:20:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:20:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:20:37:WU01:FS00:0xa7:       Bits: 64
19:20:37:WU01:FS00:0xa7:       Mode: Release
19:20:37:WU01:FS00:0xa7:************************************ System ************************************
19:20:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:20:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:20:37:WU01:FS00:0xa7:       CPUs: 64
19:20:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:20:37:WU01:FS00:0xa7:Free Memory: 57.74GiB
19:20:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:20:37:WU01:FS00:0xa7: OS Version: 5.0
19:20:37:WU01:FS00:0xa7:Has Battery: false
19:20:37:WU01:FS00:0xa7: On Battery: false
19:20:37:WU01:FS00:0xa7: UTC Offset: -4
19:20:37:WU01:FS00:0xa7:        PID: 130673
19:20:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:20:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:20:37:WU01:FS00:0xa7:    Version: 0.0.18
19:20:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:20:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:20:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:20:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:20:37:WU01:FS00:0xa7:       Time: 06:13:26
19:20:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:20:37:WU01:FS00:0xa7:     Branch: master
19:20:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:20:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:20:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:20:37:WU01:FS00:0xa7:       Bits: 64
19:20:37:WU01:FS00:0xa7:       Mode: Release
19:20:37:WU01:FS00:0xa7:************************************ Build *************************************
19:20:37:WU01:FS00:0xa7:       SIMD: avx_256
19:20:37:WU01:FS00:0xa7:********************************************************************************
19:20:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:20:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:20:37:WU01:FS00:0xa7:Reading tar file core.xml
19:20:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:20:37:WU01:FS00:0xa7:Digital signatures verified
19:20:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:20:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:20:37:WU01:FS00:0xa7:ERROR:
19:20:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:20:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:20:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:20:37:WU01:FS00:0xa7:ERROR:
19:20:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:20:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:20:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:20:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:20:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:20:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:20:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:20:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:20:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:20:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:20:42:WU01:FS00:0xa7:Saving result file md.log
19:20:42:WU01:FS00:0xa7:Saving result file science.log
19:20:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:21:36:WU01:FS00:Starting
19:21:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:21:36:WU01:FS00:Started FahCore on PID 130811
19:21:36:WU01:FS00:Core PID:130815
19:21:36:WU01:FS00:FahCore 0xa7 started
19:21:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:21:36Z ***********************
19:21:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:21:37:WU01:FS00:0xa7:       Type: 0xa7
19:21:37:WU01:FS00:0xa7:       Core: Gromacs
19:21:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130811 -checkpoint 15 -np
19:21:37:WU01:FS00:0xa7:             63
19:21:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:21:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:21:37:WU01:FS00:0xa7:       Time: 06:06:57
19:21:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:21:37:WU01:FS00:0xa7:     Branch: master
19:21:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:21:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:21:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:21:37:WU01:FS00:0xa7:       Bits: 64
19:21:37:WU01:FS00:0xa7:       Mode: Release
19:21:37:WU01:FS00:0xa7:************************************ System ************************************
19:21:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:21:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:21:37:WU01:FS00:0xa7:       CPUs: 64
19:21:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:21:37:WU01:FS00:0xa7:Free Memory: 57.73GiB
19:21:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:21:37:WU01:FS00:0xa7: OS Version: 5.0
19:21:37:WU01:FS00:0xa7:Has Battery: false
19:21:37:WU01:FS00:0xa7: On Battery: false
19:21:37:WU01:FS00:0xa7: UTC Offset: -4
19:21:37:WU01:FS00:0xa7:        PID: 130815
19:21:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:21:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:21:37:WU01:FS00:0xa7:    Version: 0.0.18
19:21:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:21:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:21:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:21:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:21:37:WU01:FS00:0xa7:       Time: 06:13:26
19:21:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:21:37:WU01:FS00:0xa7:     Branch: master
19:21:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:21:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:21:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:21:37:WU01:FS00:0xa7:       Bits: 64
19:21:37:WU01:FS00:0xa7:       Mode: Release
19:21:37:WU01:FS00:0xa7:************************************ Build *************************************
19:21:37:WU01:FS00:0xa7:       SIMD: avx_256
19:21:37:WU01:FS00:0xa7:********************************************************************************
19:21:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:21:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:21:37:WU01:FS00:0xa7:Reading tar file core.xml
19:21:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:21:37:WU01:FS00:0xa7:Digital signatures verified
19:21:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:21:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:21:37:WU01:FS00:0xa7:ERROR:
19:21:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:21:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:21:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:21:37:WU01:FS00:0xa7:ERROR:
19:21:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:21:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:21:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:21:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:21:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:21:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:21:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:21:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:21:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:21:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:21:42:WU01:FS00:0xa7:Saving result file md.log
19:21:42:WU01:FS00:0xa7:Saving result file science.log
19:21:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:21:47:WU00:FS01:Connecting to 65.254.110.245:8080
[93m19:21:47:WARNING:WU00:FS01:Failed to get assignment from '65.254.110.245:8080': No WUs available for this configuration[0m
19:21:47:WU00:FS01:Connecting to 18.218.241.186:80
[93m19:21:47:WARNING:WU00:FS01:Failed to get assignment from '18.218.241.186:80': No WUs available for this configuration[0m
[91m19:21:47:ERROR:WU00:FS01:Exception: Could not get an assignment[0m
19:22:36:WU01:FS00:Starting
19:22:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:22:36:WU01:FS00:Started FahCore on PID 130955
19:22:36:WU01:FS00:Core PID:130959
19:22:36:WU01:FS00:FahCore 0xa7 started
19:22:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:22:36Z ***********************
19:22:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:22:37:WU01:FS00:0xa7:       Type: 0xa7
19:22:37:WU01:FS00:0xa7:       Core: Gromacs
19:22:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 130955 -checkpoint 15 -np
19:22:37:WU01:FS00:0xa7:             63
19:22:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:22:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:22:37:WU01:FS00:0xa7:       Time: 06:06:57
19:22:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:22:37:WU01:FS00:0xa7:     Branch: master
19:22:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:22:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:22:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:22:37:WU01:FS00:0xa7:       Bits: 64
19:22:37:WU01:FS00:0xa7:       Mode: Release
19:22:37:WU01:FS00:0xa7:************************************ System ************************************
19:22:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:22:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:22:37:WU01:FS00:0xa7:       CPUs: 64
19:22:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:22:37:WU01:FS00:0xa7:Free Memory: 57.74GiB
19:22:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:22:37:WU01:FS00:0xa7: OS Version: 5.0
19:22:37:WU01:FS00:0xa7:Has Battery: false
19:22:37:WU01:FS00:0xa7: On Battery: false
19:22:37:WU01:FS00:0xa7: UTC Offset: -4
19:22:37:WU01:FS00:0xa7:        PID: 130959
19:22:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:22:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:22:37:WU01:FS00:0xa7:    Version: 0.0.18
19:22:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:22:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:22:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:22:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:22:37:WU01:FS00:0xa7:       Time: 06:13:26
19:22:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:22:37:WU01:FS00:0xa7:     Branch: master
19:22:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:22:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:22:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:22:37:WU01:FS00:0xa7:       Bits: 64
19:22:37:WU01:FS00:0xa7:       Mode: Release
19:22:37:WU01:FS00:0xa7:************************************ Build *************************************
19:22:37:WU01:FS00:0xa7:       SIMD: avx_256
19:22:37:WU01:FS00:0xa7:********************************************************************************
19:22:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:22:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:22:37:WU01:FS00:0xa7:Reading tar file core.xml
19:22:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:22:37:WU01:FS00:0xa7:Digital signatures verified
19:22:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:22:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:22:37:WU01:FS00:0xa7:ERROR:
19:22:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:22:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:22:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:22:37:WU01:FS00:0xa7:ERROR:
19:22:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:22:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:22:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:22:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:22:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:22:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:22:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:22:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:22:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:22:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:22:42:WU01:FS00:0xa7:Saving result file md.log
19:22:42:WU01:FS00:0xa7:Saving result file science.log
19:22:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:23:36:WU01:FS00:Starting
19:23:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:23:36:WU01:FS00:Started FahCore on PID 445
19:23:36:WU01:FS00:Core PID:449
19:23:36:WU01:FS00:FahCore 0xa7 started
19:23:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:23:36Z ***********************
19:23:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:23:37:WU01:FS00:0xa7:       Type: 0xa7
19:23:37:WU01:FS00:0xa7:       Core: Gromacs
19:23:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 445 -checkpoint 15 -np 63
19:23:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:23:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:23:37:WU01:FS00:0xa7:       Time: 06:06:57
19:23:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:23:37:WU01:FS00:0xa7:     Branch: master
19:23:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:23:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:23:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:23:37:WU01:FS00:0xa7:       Bits: 64
19:23:37:WU01:FS00:0xa7:       Mode: Release
19:23:37:WU01:FS00:0xa7:************************************ System ************************************
19:23:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:23:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:23:37:WU01:FS00:0xa7:       CPUs: 64
19:23:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:23:37:WU01:FS00:0xa7:Free Memory: 57.73GiB
19:23:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:23:37:WU01:FS00:0xa7: OS Version: 5.0
19:23:37:WU01:FS00:0xa7:Has Battery: false
19:23:37:WU01:FS00:0xa7: On Battery: false
19:23:37:WU01:FS00:0xa7: UTC Offset: -4
19:23:37:WU01:FS00:0xa7:        PID: 449
19:23:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:23:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:23:37:WU01:FS00:0xa7:    Version: 0.0.18
19:23:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:23:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:23:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:23:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:23:37:WU01:FS00:0xa7:       Time: 06:13:26
19:23:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:23:37:WU01:FS00:0xa7:     Branch: master
19:23:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:23:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:23:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:23:37:WU01:FS00:0xa7:       Bits: 64
19:23:37:WU01:FS00:0xa7:       Mode: Release
19:23:37:WU01:FS00:0xa7:************************************ Build *************************************
19:23:37:WU01:FS00:0xa7:       SIMD: avx_256
19:23:37:WU01:FS00:0xa7:********************************************************************************
19:23:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:23:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:23:37:WU01:FS00:0xa7:Reading tar file core.xml
19:23:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:23:37:WU01:FS00:0xa7:Digital signatures verified
19:23:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:23:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:23:37:WU01:FS00:0xa7:ERROR:
19:23:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:23:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:23:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:23:37:WU01:FS00:0xa7:ERROR:
19:23:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:23:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:23:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:23:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:23:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:23:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:23:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:23:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:23:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:23:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:23:42:WU01:FS00:0xa7:Saving result file md.log
19:23:42:WU01:FS00:0xa7:Saving result file science.log
19:23:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
19:24:36:WU01:FS00:Starting
19:24:36:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper "/home/FAH/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7" -dir 01 -suffix 01 -version 705 -lifeline 129994 -checkpoint 15 -np 63
19:24:36:WU01:FS00:Started FahCore on PID 646
19:24:36:WU01:FS00:Core PID:650
19:24:36:WU01:FS00:FahCore 0xa7 started
19:24:37:WU01:FS00:0xa7:*********************** Log Started 2020-04-14T19:24:36Z ***********************
19:24:37:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
19:24:37:WU01:FS00:0xa7:       Type: 0xa7
19:24:37:WU01:FS00:0xa7:       Core: Gromacs
19:24:37:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 646 -checkpoint 15 -np 63
19:24:37:WU01:FS00:0xa7:************************************ CBang *************************************
19:24:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:24:37:WU01:FS00:0xa7:       Time: 06:06:57
19:24:37:WU01:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
19:24:37:WU01:FS00:0xa7:     Branch: master
19:24:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:24:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
19:24:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:24:37:WU01:FS00:0xa7:       Bits: 64
19:24:37:WU01:FS00:0xa7:       Mode: Release
19:24:37:WU01:FS00:0xa7:************************************ System ************************************
19:24:37:WU01:FS00:0xa7:        CPU: AMD Ryzen Threadripper 2990WX 32-Core Processor
19:24:37:WU01:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
19:24:37:WU01:FS00:0xa7:       CPUs: 64
19:24:37:WU01:FS00:0xa7:     Memory: 62.84GiB
19:24:37:WU01:FS00:0xa7:Free Memory: 57.73GiB
19:24:37:WU01:FS00:0xa7:    Threads: POSIX_THREADS
19:24:37:WU01:FS00:0xa7: OS Version: 5.0
19:24:37:WU01:FS00:0xa7:Has Battery: false
19:24:37:WU01:FS00:0xa7: On Battery: false
19:24:37:WU01:FS00:0xa7: UTC Offset: -4
19:24:37:WU01:FS00:0xa7:        PID: 650
19:24:37:WU01:FS00:0xa7:        CWD: /home/FAH/work
19:24:37:WU01:FS00:0xa7:******************************** Build - libFAH ********************************
19:24:37:WU01:FS00:0xa7:    Version: 0.0.18
19:24:37:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
19:24:37:WU01:FS00:0xa7:  Copyright: 2019 foldingathome.org
19:24:37:WU01:FS00:0xa7:   Homepage: https://foldingathome.org/
19:24:37:WU01:FS00:0xa7:       Date: Nov 5 2019
19:24:37:WU01:FS00:0xa7:       Time: 06:13:26
19:24:37:WU01:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
19:24:37:WU01:FS00:0xa7:     Branch: master
19:24:37:WU01:FS00:0xa7:   Compiler: GNU 8.3.0
19:24:37:WU01:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
19:24:37:WU01:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
19:24:37:WU01:FS00:0xa7:       Bits: 64
19:24:37:WU01:FS00:0xa7:       Mode: Release
19:24:37:WU01:FS00:0xa7:************************************ Build *************************************
19:24:37:WU01:FS00:0xa7:       SIMD: avx_256
19:24:37:WU01:FS00:0xa7:********************************************************************************
19:24:37:WU01:FS00:0xa7:Project: 16418 (Run 0, Clone 521, Gen 95)
19:24:37:WU01:FS00:0xa7:Unit: 0x0000006096880e6e5e8255be4bc096ec
19:24:37:WU01:FS00:0xa7:Reading tar file core.xml
19:24:37:WU01:FS00:0xa7:Reading tar file frame95.tpr
19:24:37:WU01:FS00:0xa7:Digital signatures verified
19:24:37:WU01:FS00:0xa7:Calling: mdrun -s frame95.tpr -o frame95.trr -x frame95.xtc -cpt 15 -nt 63
19:24:37:WU01:FS00:0xa7:Steps: first=23750000 total=250000
19:24:37:WU01:FS00:0xa7:ERROR:
19:24:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:24:37:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
19:24:37:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
19:24:37:WU01:FS00:0xa7:ERROR:
19:24:37:WU01:FS00:0xa7:ERROR:Fatal error:
19:24:37:WU01:FS00:0xa7:ERROR:There is no domain decomposition for 49 ranks that is compatible with the given box and a minimum cell size of 1.45733 nm
19:24:37:WU01:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
19:24:37:WU01:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
19:24:37:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
19:24:37:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
19:24:37:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
19:24:42:WU01:FS00:0xa7:WARNING:Unexpected exit() call
19:24:42:WU01:FS00:0xa7:WARNING:Unexpected exit from science code
19:24:42:WU01:FS00:0xa7:Saving result file ../logfile_01.txt
19:24:42:WU01:FS00:0xa7:Saving result file md.log
19:24:42:WU01:FS00:0xa7:Saving result file science.log
19:24:42:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)

blastdoor · Tue Apr 14, 2020 7:38 pm

Topinio wrote:
Did you use your own passkey?

Can you post your full config.xml using the Code tags? And the full log.txt?

That GROMACS error is basically trying to run a too small job on a big system.

to try and address the GROMACS issue, I've manually set up four CPU slots with 8 cores each. Early indications are promising...

Topinio · Wed Apr 15, 2020 8:35 am

Yeah, that should do it.

Do you know how many PPD you are getting for each of those 4 slots?

That GT 1030 is worth maybe 25-30k PPD, you might find it has too big an impact on your CPU folding to be worth it though.

blastdoor · Wed Apr 15, 2020 10:06 am

Topinio wrote:
Yeah, that should do it.

Do you know how many PPD you are getting for each of those 4 slots?

That GT 1030 is worth maybe 25-30k PPD, you might find it has too big an impact on your CPU folding to be worth it though.

It looks like about 8-13k PPD per 8 core slot, if I'm reading correctly.

The trick, though, is keeping them fed. It seems FAH isn't able to push out enough work units to keep all of my CPU slots busy.

Topinio · Wed Apr 15, 2020 1:44 pm

Something is wrong with your CPU PPD, 13k is achievable with 2 Skylake cores at 3.7 GHz while also running a GPU slot. (Higher total CPU load will lower the system's GPU slot PPD, there is a cross-over point; mine is at >= 2 CPU slot threads, where my GPU slot PPD goes from ~480k to ~465k.)

Have you tried running 1 8-way CPU slot?

As 28k PPD is available from my GT 1030, I guess it is worth your while running the GPU slot if you can.

Edit: https://greenfoldingathome.com/2017/04/ ... -fx-8320e/ 30k PPD from a FX-8320E !

blastdoor · Thu Apr 16, 2020 5:59 am

I had not appreciated the benefits of getting a passkey. I now have a passkey and I'm getting much, much higher PPD.

I have 8, 8-core CPU slots (in a 2990wx system) set up and each is reporting over 30k PPD. The overall system is reporting about 260k PPD. (on my 2014 iMac I'm now getting over 30k PPD; on my 2017 MacBook Pro I'm getting over 40k PPD).

So far, I can't get the GPU in my Linux 2990wx system to work. In system info it claims it can't find the file libcuda.so (nor can it find libOpenCl.so, but I presume I want cuda?)

Should this library have been installed as part of FAH, or is it something I have to install separately?

Topinio wrote:
Something is wrong with your CPU PPD, 13k is achievable with 2 Skylake cores at 3.7 GHz while also running a GPU slot. (Higher total CPU load will lower the system's GPU slot PPD, there is a cross-over point; mine is at >= 2 CPU slot threads, where my GPU slot PPD goes from ~480k to ~465k.)

Have you tried running 1 8-way CPU slot?

As 28k PPD is available from my GT 1030, I guess it is worth your while running the GPU slot if you can.

Edit: https://greenfoldingathome.com/2017/04/ ... -fx-8320e/ 30k PPD from a FX-8320E !

Topinio · Thu Apr 16, 2020 7:05 am

Separately. https://www.nvidia.co.uk/Download/index.aspx

It's a self-extracting shell script, run it as root. Latest for the 1030 is 440.82

blastdoor · Thu Apr 16, 2020 9:14 am

Topinio wrote:
Separately. https://www.nvidia.co.uk/Download/index.aspx

It's a self-extracting shell script, run it as root. Latest for the 1030 is 440.82

Cool --- thanks so much for all your help!!

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